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In this notebook I mount Owl on Emu (as Windows) in order to access Lumos MS/MS .raw files from the Geoduck Proteomics DIA run.





In [1]:



    


# This is how to mounting my Owl folder to Emu 
! sudo mount -t cifs -o username=lhs3 //owl.fish.washington.edu/web ~/Documents/Laura/owl_generosa



    


















    






Password:

















In [1]:



    


pwd



    


















    
Out[1]:








u'/home/srlab/Documents/Laura/Jupyter'

















In [2]:



    


cd ../DNR_geoduck/



    


















    






/home/srlab/Documents/Laura/DNR_geoduck

















In [3]:



    


ls



    


















    






2017_January_23_envtstress_blank10.raw
2017_January_23_envtstress_blank11.raw
2017_January_23_envtstress_blank12.raw
2017_January_23_envtstress_blank13.raw
2017_January_23_envtstress_blank14.raw
2017_January_23_envtstress_blank15.raw
2017_January_23_envtstress_blank16.raw
2017_January_23_envtstress_blank18.raw
2017_January_23_envtstress_blank19.raw
2017_January_23_envtstress_blank1.raw
2017_January_23_envtstress_blank20.raw
2017_January_23_envtstress_blank21_170126134757.raw
2017_January_23_envtstress_blank21.raw
2017_January_23_envtstress_blank2_2.raw
2017_January_23_envtstress_blank22.raw
2017_January_23_envtstress_blank23.raw
2017_January_23_envtstress_blank24.raw
2017_January_23_envtstress_blank2.raw
2017_January_23_envtstress_blank3.raw
2017_January_23_envtstress_blank4.raw
2017_January_23_envtstress_blank5.raw
2017_January_23_envtstress_blank6.raw
2017_January_23_envtstress_blank7_170124182434.raw
2017_January_23_envtstress_blank7.raw
2017_January_23_envtstress_blank8_170124213729.raw
2017_January_23_envtstress_blank8.raw
2017_January_23_envtstress_blank9.raw
2017_January_23_envtstress_geoduck10.raw
2017_January_23_envtstress_geoduck11.raw
2017_January_23_envtstress_geoduck12.raw
2017_January_23_envtstress_geoduck13.raw
2017_January_23_envtstress_geoduck14.raw
2017_January_23_envtstress_geoduck15.raw
2017_January_23_envtstress_geoduck17.raw
2017_January_23_envtstress_geoduck18.raw
2017_January_23_envtstress_geoduck19.raw
2017_January_23_envtstress_geoduck1.raw
2017_January_23_envtstress_geoduck20.raw
2017_January_23_envtstress_geoduck2.raw
2017_January_23_envtstress_geoduck3.raw
2017_January_23_envtstress_geoduck4.raw
2017_January_23_envtstress_geoduck5.raw
2017_January_23_envtstress_geoduck6.raw
2017_January_23_envtstress_geoduck7_170124190430.raw
2017_January_23_envtstress_geoduck7.raw
2017_January_23_envtstress_geoduck8.raw
2017_January_23_envtstress_geoduck9.raw
40min_Blank_2a85ec5b-43bf-4ca9-ba53-79d8b9c9489f..meth
geoduck_DIA_5_30%B_110min_OTMS2_AGC_2e3.meth
Geoduck-transcriptome-v2.transdecoder.pep
index.cgi?launchApp=SYNO.SDS.App.FileStation3.Instance
raw_checksum.sha

















In [4]:



    


! head raw_checksum.sha



    


















    






2dc82dc2436495877bf0c6573709e99a0619a1b7  ../Lumos_Raw/2017_January_23_envtstress_blank10.raw
ef03609dcee24be3077ca28dc2697145d0953b5a  ../Lumos_Raw/2017_January_23_envtstress_blank11.raw
99ba768fe771a63030a442fd0178c623155e5f84  ../Lumos_Raw/2017_January_23_envtstress_blank12.raw
1686a1d29a003d5f85312edb5b4421ed58f2e9cb  ../Lumos_Raw/2017_January_23_envtstress_blank13.raw
6d171848e74921dcae396f28efa6d7ffd1fead4b  ../Lumos_Raw/2017_January_23_envtstress_blank14.raw
d8a8fb90ac80f1e1a7f9fe34d2d1bb022258dd28  ../Lumos_Raw/2017_January_23_envtstress_blank15.raw
345c9b40bc60a39b30ba989bb1671e728d85fafe  ../Lumos_Raw/2017_January_23_envtstress_blank16.raw
d86fdf12ac72307fe910b277167e8c83f8b35297  ../Lumos_Raw/2017_January_23_envtstress_blank18.raw
cb224a12915a5613ef9ed456cc34252197ea23c0  ../Lumos_Raw/2017_January_23_envtstress_blank19.raw
a46b7e7a94ff5c640ed43b42265a7daa956544cf  ../Lumos_Raw/2017_January_23_envtstress_blank1.raw

















In [5]:



    


! shasum /home/srlab/Documents/Laura/DNR_geoduck/*raw > rawlocal_checksum.sha



    











In [6]:



    


ls



    


















    






2017_January_23_envtstress_blank10.raw
2017_January_23_envtstress_blank11.raw
2017_January_23_envtstress_blank12.raw
2017_January_23_envtstress_blank13.raw
2017_January_23_envtstress_blank14.raw
2017_January_23_envtstress_blank15.raw
2017_January_23_envtstress_blank16.raw
2017_January_23_envtstress_blank18.raw
2017_January_23_envtstress_blank19.raw
2017_January_23_envtstress_blank1.raw
2017_January_23_envtstress_blank20.raw
2017_January_23_envtstress_blank21_170126134757.raw
2017_January_23_envtstress_blank21.raw
2017_January_23_envtstress_blank2_2.raw
2017_January_23_envtstress_blank22.raw
2017_January_23_envtstress_blank23.raw
2017_January_23_envtstress_blank24.raw
2017_January_23_envtstress_blank2.raw
2017_January_23_envtstress_blank3.raw
2017_January_23_envtstress_blank4.raw
2017_January_23_envtstress_blank5.raw
2017_January_23_envtstress_blank6.raw
2017_January_23_envtstress_blank7_170124182434.raw
2017_January_23_envtstress_blank7.raw
2017_January_23_envtstress_blank8_170124213729.raw
2017_January_23_envtstress_blank8.raw
2017_January_23_envtstress_blank9.raw
2017_January_23_envtstress_geoduck10.raw
2017_January_23_envtstress_geoduck11.raw
2017_January_23_envtstress_geoduck12.raw
2017_January_23_envtstress_geoduck13.raw
2017_January_23_envtstress_geoduck14.raw
2017_January_23_envtstress_geoduck15.raw
2017_January_23_envtstress_geoduck17.raw
2017_January_23_envtstress_geoduck18.raw
2017_January_23_envtstress_geoduck19.raw
2017_January_23_envtstress_geoduck1.raw
2017_January_23_envtstress_geoduck20.raw
2017_January_23_envtstress_geoduck2.raw
2017_January_23_envtstress_geoduck3.raw
2017_January_23_envtstress_geoduck4.raw
2017_January_23_envtstress_geoduck5.raw
2017_January_23_envtstress_geoduck6.raw
2017_January_23_envtstress_geoduck7_170124190430.raw
2017_January_23_envtstress_geoduck7.raw
2017_January_23_envtstress_geoduck8.raw
2017_January_23_envtstress_geoduck9.raw
40min_Blank_2a85ec5b-43bf-4ca9-ba53-79d8b9c9489f..meth
geoduck_DIA_5_30%B_110min_OTMS2_AGC_2e3.meth
Geoduck-transcriptome-v2.transdecoder.pep
index.cgi?launchApp=SYNO.SDS.App.FileStation3.Instance
raw_checksum.sha
rawlocal_checksum.sha

Comparing local .raw files to those on Owl using checksums via shasum -c





In [ ]:



    


! shasum -c raw_checksum.sha rawlocal_checksum.sha > raw-checksum-results.txt

Content source: laurahspencer/LabNotebook

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